PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.3G349900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 150aa    MW: 16621.6 Da    PI: 7.7886
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.3G349900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.78e-162382463
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                         +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+aeN + + ++  +  ++a++++e+
  Sevir.3G349900.1.p 23 HRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAENARVAARAADIASQYARVEQEN 82
                        58*****************************************************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.8E-121773No hitNo description
SMARTSM003381.2E-172084IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.32285IPR004827Basic-leucine zipper domain
PfamPF001701.7E-122382IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.28E-102474No hitNo description
CDDcd147023.66E-162576No hitNo description
PROSITE patternPS0003602742IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006971Biological Processhypotonic response
GO:0009267Biological Processcellular response to starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000693Biological Processpositive regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MSSSSLSPAG RTSGSDGDSA DTHRREKRRL SNRESARRSR LRKQQHLDEL VQEVARLQAE  60
NARVAARAAD IASQYARVEQ ENTVLRARAA ELGDRLRSVN EVLRVVEEFS GVAMDIQEEM  120
PADDPLLRPW QLPYPAAAMP IGGAHMLQY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13642RRSRLRK
23643RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00419DAPTransfer from AT3G62420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342891e-177BT034289.1 Zea mays full-length cDNA clone ZM_BFc0009B07 mRNA, complete cds.
GenBankBT0884081e-177BT088408.1 Zea mays full-length cDNA clone ZM_BFc0179N23 mRNA, complete cds.
GenBankEU9647361e-177EU964736.1 Zea mays clone 281235 ocs element-binding factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962768.11e-103PREDICTED: ocs element-binding factor 1
SwissprotP240684e-96OCS1_MAIZE; Ocs element-binding factor 1
TrEMBLK3ZAH01e-103K3ZAH0_SETIT; Uncharacterized protein
STRINGSi023541m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188635100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62420.12e-29basic region/leucine zipper motif 53